KISHIDA Takushi
| Department of Zoological Science | Professor |
Researcher Information
Career
Educational Background
Member History
- Aug. 2024 - Mar. 2025
Visiting Advisor, Kanagawa Archaeology Foundation - Apr. 2023 - Aug. 2024
Committess of the 26th Annual Meeting of Society for Evolutionary Studies, Japan, Society for Evolutionary Studies, Japan - Apr. 2019 - Aug. 2020
Theoretical exam committee, The 31st International Biology Olympiad, Nagasaki 2020
Research activity information
Paper
- Decoding the Centromeric Region with a Near Complete Genome Assembly of the Oshima CherryCerasus speciosa
Kazumichi Fujiwara; Atsushi Toyoda; Bhim B. Biswa; Takushi Kishida; Momi Tsuruta; Yasukazu Nakamura; Noriko Kimura; Shoko Kawamoto; Yutaka Sato; Toshio Katsuki; Tsuyoshi Koide
bioRxiv, Jun. 2024, Not refereed, Not invited - Synchronized Expansion and Contraction of Olfactory, Vomeronasal, and Taste Receptor Gene Families in Hystricomorph Rodents
Yoshihito Niimura; Bhim B Biswa; Takushi Kishida; Atsushi Toyoda; Kazumichi Fujiwara; Masato Ito; Kazushige Touhara; Miho Inoue-Murayama; Scott H Jenkins; Christopher Adenyo; Boniface B Kayang; Tsuyoshi Koide
Molecular Biology and Evolution, Apr. 2024, Refereed, Not invited - Localized Expression of Olfactory Receptor Genes in the Olfactory Organ of Common Minke Whales
Ayumi Hirose; Gen Nakamura; Masato Nikaido; Yoshihiro Fujise; Hidehiro Kato; Takushi Kishida
International Journal of Molecular Sciences, Mar. 2024, Refereed, Not invited
Last - Mitochondria DNA haplotype of a Japanese black bear, Ursus thibetanus japonicus, caught in Izu Peninsula in 1900
Takushi Kishida
Bulletin of the Museum of Natural and Environmental History, Shizuoka, Mar. 2024, Refereed, Not invited
Lead - Unstable environmental conditions constrain the fine-tune between opsin sensitivity and underwater light in an Amazon forest stream fish
Elio de Almeida Borghezan; Tiago Henrique da Silva Pires; Jansen Zuanon; Hideki Sugiura; Shiro Kohshima; Takushi Kishida
Journal of Evolutionary Biology, Feb. 2024, Refereed, Not invited
Last - Dolphins from a prehistoric midden imply long-term philopatry of delphinids around Tokyo Bay
Takushi Kishida; Sakiko Namigata; Toshimichi Nakanishi; Yasukazu Niiyama; Hiroyuki Kitagawa
Biological Journal of the Linnean Society, Nov. 2023, Refereed, Not invited
Lead - 静岡県に分布するヤリタナゴTanakia lanceolata の遺伝的特徴
小川紋; 村田学博; 水本嗣郎; 森主博貴; 石神勝幸; 長岡宏美; 山田辰美; 岸田拓士
東海自然誌, Mar. 2023, Refereed
Last - Tadpoles and frogs have a different sense of taste
Takushi Kishida
Proceedings of the National Academy of Sciences of the United States of America, Feb. 2023, Refereed, Invited
Lead - Genomics reveals a genetically isolated population of the Pacific white‐sided dolphin (Lagenorhynchus obliquidens) distributed in the Sea of Japan
Miwa Suzuki; Kaho Ohno; Eitaro Sawayama; Shin‐Ichi Morinaga; Takushi Kishida; Teruyo Matsumoto; Haruhiko Kato
Molecular Ecology, Feb. 2023, Refereed, Not invited - Genetic diversity and population history of the Japanese black bear (Ursus thibetanus japonicus) based on the genome‐wide analyses
Takushi Kishida; Masataka Ohashi; Yosuke Komatsu
Ecological Research, Sep. 2022, Refereed, Not invited
Lead - Olfactory epithelium and ontogeny of the nasal chambers in the bowhead whale (Balaena mysticetus)
Ian C. Farnkopf; John Craig George; Takushi Kishida; Daniel J. Hillmann; Robert S. Suydam; J. G. M. Thewissen
The Anatomical Record, Mar. 2022, Refereed, Not invited - Corrigendum to “Phylogenomics of the genus Tursiops and closely related delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers” [Mol. Phylogenet. Evol. 146 (2020) 106756] (Molecular Phylogenetics and Evolution (2020) 146, (S1055790320300282), (10.1016/j.ympev.2020.106756))
Andre E. Moura; Kypher Shreves; Małgorzata Pilot; Kimberly R. Andrews; Daniel M. Moore; Takushi Kishida; Luciana Möller; Ada Natoli; Stefania Gaspari; Michael McGowen; Ing Chen; Howard Gray; Mauvis Gore; Ross M. Culloch; Muhammad S. Kiani; Maia Sarrouf Willson; Asma Bulushi; Tim Collins; Robert Baldwin; Andrew Willson; Gianna Minton; Louisa Ponnampalam; A. Rus Hoelzel
Molecular Phylogenetics and Evolution, Apr. 2021 - Population history and genomic admixture of sea snakes of the genus Laticauda in the West Pacific
Takushi Kishida; Mamoru Toda; Yasuhiro Go; Shoji Tatsumoto; Takahide Sasai; Tsutomu Hikida
Molecular Phylogenetics and Evolution, Feb. 2021, Refereed, Not invited
Lead - Olfaction of aquatic amniotes
Takushi Kishida
Cell and Tissue Research, Jan. 2021, Refereed, Invited
Lead - Visual adaptation of opsin genes to the aquatic environment in sea snakes
Takashi Seiko; Takushi Kishida; Mina Toyama; Takahiko Hariyama; Takashi Okitsu; Akimori Wada; Mamoru Toda; Yoko Satta; Yohey Terai
BMC Evolutionary Biology, Dec. 2020, Refereed, Not invited - Antioxidative potency of dolphin serum albumin is stronger than that of human serum albumin irrespective of substitution of 34 cysteine with serine
Miwa Suzuki; Makoto Anraku; Wataru Hakamata; Takushi Kishida; Keiichi Ueda; Tomoko Endoh
Frontiers in Physiology, Nov. 2020, Refereed, Not invited - Population history of the golden eagle inferred from whole-genome sequencing of three of its subspecies
Yu Sato; Rob Ogden; Takushi Kishida; Nobuyoshi Nakajima; Taku Maeda; Miho Inoue-Murayama
Biological Journal of the Linnean Society, Jul. 2020, Refereed, Not invited - Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers
Andre E. Moura; Kypher Shreves; Małgorzata Pilot; Kimberly R. Andrews; Daniel M. Moore; Takushi Kishida; Luciana Möller; Ada Natoli; Stefania Gaspari; Michael McGowen; Ing Chen; Howard Gray; Mauvis Gore; Ross M. Culloch; Muhammad S. Kiani; Maia Sarrouf Willson; Asma Bulushi; Tim Collins; Robert Baldwin; Andrew Willson; Gianna Minton; Louisa Ponnampalam; A. Rus Hoelzel
Molecular Phylogenetics and Evolution, 2020, Refereed, Not invited - Loss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotes.
Takushi Kishida; Yasuhiro Go; Shoji Tatsumoto; Kaori Tatsumi; Shigehiro Kuraku; Mamoru Toda
Proceedings of the Royal Society B, Sep. 2019, Refereed, Not invited
Lead - A Single Pheromone Receptor Gene Conserved across 400 My of Vertebrate Evolution.
Hikoyu Suzuki; Hidefumi Nishida; Hiro Kondo; Ryota Yoda; Tetsuo Iwata; Kanako Nakayama; Takayuki Enomoto; Jiaqi Wu; Keiko Moriya-Ito; Masao Miyazaki; Yoshihiro Wakabayashi; Takushi Kishida; Masataka Okabe; Yutaka Suzuki; Takehiko Ito; Junji Hirota; Masato Nikaido
Molecular Biology and Evolution, Dec. 2018, Refereed, Not invited - How snakes find prey underwater: sea snakes use visual and chemical cues for foraging
Kutsuma R; Sasai T; Kishida T
Zoological Science, Dec. 2018, Refereed, Not invited
Last - Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island
Hayakawa, Takashi; Sawada, Akiko; Tanabe, Akifumi S.; Fukuda, Shinji; Kishida, Takushi; Kurihara, Yosuke; Matsushima, Kei; Liu, Jie; Akomo-Okoue, Etienne-Francois; Gravena, Waleska; Kashima, Makoto; Suzuki, Mariko; Kadowaki, Kohmei; Suzumura, Takafumi; Inoue, Eiji; Sugiura, Hideki; Hanya, Goro; Agata, Kiyokazu
PRIMATES, Sep. 2018, Refereed, Not invited - Evolution of the alternative AQP2 gene: Acquisition of a novel protein-coding sequence in dolphins
Takushi Kishida; Miwa Suzuki; Asuka Takayama
MOLECULAR PHYLOGENETICS AND EVOLUTION, Jan. 2018, Refereed, Not invited - Nasal mucosa resembling an olfactory system in the common minke whale (Balaenoptera acutorostrata)
Hirose A; Kishida T; Nakamura G
Cetacean Population Studies, 2018, Refereed, Not invited - Population history of Antarctic and common minke whales inferred from individual whole-genome sequences
Takushi Kishida
MARINE MAMMAL SCIENCE, Apr. 2017, Refereed, Not invited
Lead - Unique pattern of dietary adaptation in the dentition of Carnivora: its advantage and developmental origin
Masakazu Asahara; Kazuyuki Saito; Takushi Kishida; Katsu Takahashi; Kazuhisa Bessho
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, Jun. 2016, Refereed, Not invited - Organization and distribution of glomeruli in the bowhead whale olfactory bulb
Takushi Kishida; J. G. M. Thewissen; Sharon Usip; Robert S. Suydam; John C. George
PEERJ, Apr. 2015, Refereed, Not invited
Lead - Aquatic adaptation and the evolution of smell and taste in whales.
Takushi Kishida; J. G. M. Thewissen; Takashi Hayakawa; Hiroo Imai; Kiyokazu Agata
Zoological Letters, 2015, Refereed, Not invited
Lead - Pairwise Comparison of Orthologous Olfactory Receptor Genes Between Two Sympatric Sibling Sea Kraits of the Genus Laticauda in Vanuatu
Takushi Kishida; Azusa Hayano; Miho Inoue-Murayama; Tsutomu Hikida
ZOOLOGICAL SCIENCE, Jun. 2013, Refereed, Not invited - Animal cellulases with a focus on aquatic invertebrates
Aya Tanimura; Wen Liu; Kyohei Yamada; Takushi Kishida; Haruhiko Toyohara
Fisheries Science, 2013, Refereed, Not invited - Evolutionary changes of the importance of olfaction in cetaceans based on the olfactory marker protein gene
Takushi Kishida; J. G. M. Thewissen
GENE, Jan. 2012, Refereed, Not invited
Lead - Olfaction and brain size in the bowhead whale (Balaena mysticetus)
J. G. M. Thewissen; John George; Cheryl Rosa; Takushi Kishida
MARINE MAMMAL SCIENCE, Apr. 2011, Refereed, Not invited
Last - Degeneration patterns of the olfactory receptor genes in sea snakes
T. Kishida; T. Hikida
JOURNAL OF EVOLUTIONARY BIOLOGY, Feb. 2010, Refereed, Not invited - Pattern of the Divergence of Olfactory Receptor Genes during Tetrapod Evolution
Takushi Kishida
PLOS ONE, Jun. 2008, Refereed, Not invited
Lead - The olfactory receptor gene repertoires in secondary-adapted marine vertebrates: evidence for reduction of the functional proportions in cetaceans
Takushi Kishida; Shin Kubota; Yoshihisa Shirayama; Hironobu Fukami
BIOLOGY LETTERS, Aug. 2007, Refereed, Not invited
Lead
MISC
- 羊膜類の海洋環境適応と嗅覚の進化
岸田拓士
科学, Dec. 2022, Not refereed, Invited - ナウマンゾウ
岸田 拓士
静岡新聞, 25 Jan. 2021, Not refereed, Invited
Lead - 全ゲノム解析が示すスローロリスの特殊生態の進化
早川卓志; 早川卓志; 辰本将司; 岸田拓士; 鈴木彦有; 樋口拓人; 石川裕恵; 二階堂雅人; 郷康広
日本進化学会大会プログラム・講演要旨集(Web), 2019 - Population genomics revealed the history of endangered Japanese golden eagle.
Sato Y; Kishida T; Ogden R; Inoue-Murayama M
PWS symposium, 2019年3月1-3日 京都大学(京都市）, 2019, Not refereed, Not invited - 日本イヌワシの個体数減少：有効集団サイズの変遷の解明
佐藤 悠; 岸田拓士; 小松 守; Rob Ogden; 井上―村山美穂
日本動物遺伝育種学会2018年京都大会 2018年9月19日 京都大学(京都市）, 2018, Not refereed, Not invited - 島国のイヌワシ：有効集団サイズの変遷
佐藤 悠; Rob Ogden; 中島信美; 岸田拓士; 小松 守; 前田 琢; 井上‐村山美穂
日本生態学会第65回全国大会 2018年3月14-18日 札幌コンベンションセンター(札幌市）, 2018, Not refereed, Not invited - 生物多様性から抽出された情報により多様性形成の遺伝的・発生学的・適応的基盤をさぐる
浅原正和; 岸田拓士; 新村芳人; 鈴木仁
哺乳類科学, 2018, Not refereed, Invited - 次世代シークエンサーを用いたヤクザル捕食昆虫の解析と屋久島の昆虫DNAデータベース作成
新美幸; 早川卓志; 岸田拓士; 阿形清和; 岡本宗裕; 屋久島フィールド; ゲノム実習プロジェクト
第5回屋久島学ソサイエティー, Dec. 2017, Not refereed, Not invited - クロミンククジラゲノムの解読
岸田 拓士
勇魚, Jun. 2016, Not refereed, Invited - Aquatic adaptation and the evolution of the sense of smell in amniotes
KISHIDA, Takushi
The Japanese journal of taste and smell research, Apr. 2016, Not refereed, Invited - 野生ニホンザルの腸内細菌叢は採食パターンに応じて変化するのか
澤田晶子; 早川卓志; 栗原洋介; 半谷吾郎; 岸田拓士; 阿形清和
第62回日本生態学会大会, Mar. 2015, Not refereed, Not invited - 鯨類は海洋環境への適応進化の過程で嗅球の背側領域を失った
岸田 拓士
Aroma Research, 2015, Not refereed, Invited - 非侵襲糞サンプリングに基づくギニア・ボッソウの野生チンパンジーの全遺伝子配列解析
HAYAKAWA TAKUSHI; KISHIDA TAKUSHI; GO YASUHIRO; KAWAGUCHI ERI; AIZU TOMOYUKI; ISHIZAKI HINAKO; TOYODA ATSUSHI; FUJIYAMA ASAO; MATSUZAWA TETSURO; AGATA KIYOKAZU
霊長類研究, 20 Jun. 2014, Not refereed, Not invited - クマ科の臼歯はどう進化したか：分類群に特徴的な形態形質の発生学的基盤をさぐる
浅原 正和; 斎藤 和幸; 岸田 拓士; 高橋 克; 別所 和久
日本霊長類学会大会プログラム抄録集, 2013, Not refereed, Not invited - 次世代シークエンサーによる屋久島ニホンザル ( Macaca fuscata yakui) に採食品目及び腸内細菌叢の網羅的探索
澤田 晶子; 早川 卓志; 瀬尾 明弘; 竹内 寛彦; Adenyo C; 岸田 拓士; 福田 真嗣; 小椋 義俊; 藤田 志歩; 鈴村 崇文; 松川 あおい; 安 洋; 井筒 弥那子; 鹿島 誠; 佐藤 勇輝; Pinto L C; 原 宏輔; 平山 実季; Hong W-T; Hor C-S; 岸本 結; 小村井 亮平; 小山 卓也; Kulanthavelu M; 熊谷 信是; Lajmi A; 前田 祐伽; 三品 達平; 中村 恭子; 西村 良太; 岡本 晃大; 酒井 理; 榊原 香鈴美; 沢田 幾太郎; 島 悠希; 清水 将裕; Nivia Aparecida; Silva do Carmo; Sinha I; 炭谷 麗; 田島 知之; 徳山 奈帆子; 山崎 曜; 矢戸 崇; 川口 恵里; 東 浩司; 村山 美穂; 曽田 貞滋; 湯本 貴和; 杉浦 秀樹; 幸島 司郎; 阿形 清和
霊長類研究 Supplement, 2013, Not refereed, Not invited - Records of cetaceans in Tanabe Bay, Wakayama Prefecture, Japan in the recent 20 years
久保田 信; 山口 一夫; 岸田 拓士
南紀生物, Jun. 2012 - 同所的に生息する近縁種の嗅覚能力は似ているのか？ バヌアツに同所的に生息する Laticauda 属ウミヘビ２種の嗅覚受容体遺伝子レパートリーの比較
岸田拓士; 早野あづさ; 村山美穂; 疋田努
日本爬虫両棲類学会第 51 回大会 (2012/11/10-11, 豊田), 2012, Refereed, Not invited - カキ類におけるクモ糸様タンパク質遺伝子の進化的保存性の探索
高橋潤; 上田能久; 岸田拓士; 豊原治彦
マリンバイオテクノロジー学会大会講演要旨集, May 2010, Refereed, Not invited - クジラとウミヘビの嗅覚器官とolfactory marker protein(OMP)遺伝子
岸田拓士; LAMY Clement; 戸田守; 阿形清和; 疋田努
日本進化学会大会プログラム・講演要旨集(Web), 2010 - 貝殻から発見されたクモ糸タンパク質
豊原治彦; 高橋潤; 東畑顕; 高木雅哉; 岸田拓士
月刊地球, Nov. 2009, Not refereed, Not invited - A summary of ongoing bowhead whale sensory research in Northern Alaska
Cheryl R; Thewissen JGM; Kishida T; Nummela S; George C; Suydam R
IWC Scientific Committee, 2009, Not refereed, Not invited - 四足動物の海洋環境適応と環境受容体遺伝子の進化
岸田 拓士
月刊海洋, Dec. 2008, Not refereed, Invited - A comparison of odorant receptor gene repertoires between terrestrial and aquatic tetrapods.
Kishida, T; Kubota, S; Hikida, T
Fifth Conference on Secondary Adaptation of Tetrapods to Life in Water, 2008, Refereed, Not invited - The evolutional analysis of two oyster silk-like proteins
UEDA TAKAHISA; TAKAHASHI JUN; SAWADA HIDEKI; TAKEO KEI; TAKAGI MASAYA; KISHIDA TAKUSHI; TOYOHARA HARUHIKO
Program Abstr 5th World Fish Congr 2008, 2008, Not refereed, Not invited - 陸棲哺乳類が海に還ったとき、ゲノム上で何が起きたのか？
岸田 拓士; 久保田 信; 白山 義久; 深見 裕伸
日本哺乳類学会2006年度大会, 2006, Refereed, Not invited - Sense receptors of marine mammals: Evidence for reduction of the functional olfactory receptors in cetaceans
Kishida Takushi; Kubota Shin; Shirayama Yoshihisa; Hattori Kaoru; Fukami Hironobu
20th International Mammalian Genome Conference, Charleston, USA, SC 2006, 2006, Refereed, Not invited - 和歌山県白浜町番所崎の南浜にて発見されたハンドウイルカ Tursiops truncatus
岸田 拓士; 森阪 匡通; 久保田 信
漂着物学会誌, Dec. 2003, Not refereed, Not invited
Books and other publications
- Saishin Chigakujiten
地学団体研究会(編), Contributor, Ancient DNA
平凡社, Mar. 2024
9784582115086 - 野生動物 追いかけて、見つめて知りたい、キミのこと
京都大学野生動物研究センター 編, Contributor, ゲノムから探るクジラの進化
京都通信社, Jun. 2018, Not refereed
9784903473604 - Brain Evolution by Design
KISHIDA, Takushi, Contributor, Evolution of the Mammalian Brain with a Focus on the Whale Olfactory Bulbs
Springer, Jan. 2017, Not refereed
9784431564676 - クジラの鼻から進化を覗く
岸田拓士, Single work
慶應義塾大学出版会, Feb. 2016
9784766422955 - 海は百面相
京都大学総合博物館, Contributor, 3-4-03 海洋環境への適応進化をウミヘビに探る
京都通信社, Sep. 2013, Not refereed
9784903473536 - 生命の歴史-進化と絶滅の40億年 (サイエンス・パレット)
鈴木 寿志; 岸田 拓士, Joint translation, Michael Benton; 鈴木寿志; 岸田拓士
丸善出版, May 2013, Not refereed
4621086669 - Evolution and Senses (SpringerBriefs in Biology)
Yoshinori Shichida; Takahiro Yamashita; Hiroo Imai; Takushi Kishida
Springer Japan, Mar. 2013, Not refereed - Recent Advances in Pearl ResearchーProceedings of the International Symposium on Pearl Research 2011
Takahashi J; Kishida T; Toyohara H, Contributor, Poly-Alanine Protein Shelk2 from Crassostrea Species of Oysters
TERRAPUB, Jan. 2013, Not refereed
9784887041585
Research Themes
- 海に戻った羊膜類の鰭獲得機構：fin-to-limbからlimb-to-finへの逆転はどう生じたか？
日本学術振興会, 科学研究費助成事業, Apr. 2024 - Mar. 2028
土岐田 昌和; 寺井 洋平; 岸田 拓士; 田村 宏治 - 日本の動物相の原風景―集団ゲノミクスと古代DNAによる在来動物の集団史の解明
日本学術振興会, 科学研究費助成事業 基盤研究(B), 01 Apr. 2022 - 31 Mar. 2026
岸田 拓士 - High-precision Paleoenvironmental Reconstruction using Borehole Cores from Paitan Lake, Luzon, Philippines
Japan Society for the Promotion of Science, Grants-in-Aid for Scientific Research Grant-in-Aid for Scientific Research (B), 01 Apr. 2022 - 31 Mar. 2025
奥野 充; 藤木 利之; 中西 利典; 岸田 拓士; 佐藤 鋭一; 田代 崇 - 陸から海にもどった羊膜類の適応形質進化機構の法則を探る
日本学術振興会, 基盤研究（B), Apr. 2019 - Mar. 2023
土岐田 昌和 - 形態とゲノム情報を用いた哺乳類の歯の形態進化の遺伝学的・発生学的要因の網羅的探索
日本学術振興会, 基盤研究（B), Apr. 2019 - Mar. 2023
浅原 正和 - コマッコウ属鯨類に探る、海産羊膜類の外洋における種分化に関する研究
日本学術振興会, 基盤研究（Ｃ）, Apr. 2018 - Mar. 2021
岸田 拓士 - ウミヘビ類の比較ゲノムに基づく海洋環境適応進化の分子的基盤の解明
日本学術振興会, 基盤研究（Ｃ）, Apr. 2015 - Mar. 2018
岸田 拓士 - ヒゲクジラの嗅球と嗅覚認識に関する研究
日本学術振興会, 若手研究（Ｂ）, Apr. 2012 - Mar. 2015
岸田 拓士 - 深海生物の赤外線感知機能に関する研究
日本学術振興会, 挑戦的萌芽研究, Apr. 2010 - Mar. 2013
豊原 治彦 - ヘビ類の嗅覚受容体遺伝子の機能とウミヘビの同所的種分化の分子的基盤に関する研究
日本学術振興会, 若手研究（Ｂ）, Apr. 2010 - Mar. 2012
岸田 拓士
